From d722b39a167f12160c649c48e8babac7ffe8e497 Mon Sep 17 00:00:00 2001
From: tkerr1 <theodoremkerr@gmail.com>
Date: Mon, 15 Nov 2021 22:18:00 +0000
Subject: [PATCH] removed the SD plots
---
.../forest_biomass_summary_DRC_output.ipynb | 92 +++++++++----------
1 file changed, 46 insertions(+), 46 deletions(-)
diff --git a/country_outputs/forest_biomass_summary_DRC_output.ipynb b/country_outputs/forest_biomass_summary_DRC_output.ipynb
index 44cd4ed..270add9 100644
--- a/country_outputs/forest_biomass_summary_DRC_output.ipynb
+++ b/country_outputs/forest_biomass_summary_DRC_output.ipynb
@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "markdown",
- "id": "sharing-writing",
+ "id": "complimentary-accountability",
"metadata": {},
"source": [
"# ESA Biomass Climate Change Initiative global forest aboveground biomass dataset v2.0 2010, 2017, 2018\n",
@@ -18,7 +18,7 @@
},
{
"cell_type": "markdown",
- "id": "future-rebel",
+ "id": "therapeutic-tumor",
"metadata": {},
"source": [
"#### Install these R packages first, and load them into the R session. Source R script with support functions."
@@ -27,7 +27,7 @@
{
"cell_type": "code",
"execution_count": 1,
- "id": "saved-albert",
+ "id": "stuffed-vegetable",
"metadata": {
"collapsed": true,
"jupyter": {
@@ -205,7 +205,7 @@
},
{
"cell_type": "markdown",
- "id": "lesbian-bibliography",
+ "id": "academic-spelling",
"metadata": {},
"source": [
"#### Set the path to the CCI, JPL, and NCEO Biomass data folders & read in world countries shapefile"
@@ -214,7 +214,7 @@
{
"cell_type": "code",
"execution_count": 16,
- "id": "cultural-exemption",
+ "id": "musical-english",
"metadata": {},
"outputs": [
{
@@ -248,7 +248,7 @@
},
{
"cell_type": "markdown",
- "id": "level-single",
+ "id": "norwegian-robertson",
"metadata": {},
"source": [
"#### Generate 10x10 degree WGS84 grid that the CCI Biomass and Hansen Forest Cover products are tiled on"
@@ -257,7 +257,7 @@
{
"cell_type": "code",
"execution_count": 3,
- "id": "confidential-decision",
+ "id": "fantastic-township",
"metadata": {},
"outputs": [
{
@@ -279,7 +279,7 @@
},
{
"cell_type": "markdown",
- "id": "informed-schedule",
+ "id": "increasing-knock",
"metadata": {},
"source": [
"#### Print out country names in Africa to select from"
@@ -288,7 +288,7 @@
{
"cell_type": "code",
"execution_count": 4,
- "id": "foreign-document",
+ "id": "widespread-going",
"metadata": {},
"outputs": [
{
@@ -596,7 +596,7 @@
},
{
"cell_type": "markdown",
- "id": "unavailable-tenant",
+ "id": "comfortable-asbestos",
"metadata": {},
"source": [
"#### Select a country in Africa to plot with corresponding data tiles"
@@ -605,7 +605,7 @@
{
"cell_type": "code",
"execution_count": 5,
- "id": "hawaiian-journalism",
+ "id": "expected-ideal",
"metadata": {},
"outputs": [
{
@@ -665,7 +665,7 @@
{
"cell_type": "code",
"execution_count": 6,
- "id": "light-domestic",
+ "id": "successful-haiti",
"metadata": {},
"outputs": [],
"source": [
@@ -675,7 +675,7 @@
},
{
"cell_type": "markdown",
- "id": "contained-leone",
+ "id": "convenient-ownership",
"metadata": {},
"source": [
"#### Read in the CCI Biomass data for this AOI from the downloaded CCI Biomass tiles, mosaicing multiple tiles as necessary"
@@ -684,7 +684,7 @@
{
"cell_type": "code",
"execution_count": 7,
- "id": "quarterly-circulation",
+ "id": "absent-haven",
"metadata": {},
"outputs": [
{
@@ -712,7 +712,7 @@
},
{
"cell_type": "markdown",
- "id": "shaped-maldives",
+ "id": "offensive-costa",
"metadata": {},
"source": [
"#### Plot the CCI AGBD for 2020"
@@ -721,7 +721,7 @@
{
"cell_type": "code",
"execution_count": 8,
- "id": "conceptual-concert",
+ "id": "spare-stanford",
"metadata": {},
"outputs": [
{
@@ -746,7 +746,7 @@
},
{
"cell_type": "markdown",
- "id": "wanted-stone",
+ "id": "vanilla-allah",
"metadata": {},
"source": [
"#### Read in the NCEO Biomass data for this AOI from the downloaded data. NCEO data is stored as a single file for the continent of Africa, rather than multiple tiles."
@@ -755,7 +755,7 @@
{
"cell_type": "code",
"execution_count": 10,
- "id": "hairy-tiger",
+ "id": "involved-burke",
"metadata": {},
"outputs": [
{
@@ -785,10 +785,10 @@
],
"source": [
"nceo_file <- 'AGB_map_2017v0m.tif'\n",
- "nceo_sd_file <- 'SD_map_2017v0m.tif'\n",
+ "# nceo_sd_file <- 'SD_map_2017v0m.tif'\n",
"\n",
- "band_names_nceo <- c(paste0('agbd_2017'), paste0('agbd_sd_2017'))\n",
- "filenames_nceo <- c(file.path(nceo_folder, nceo_file), file.path(nceo_folder, nceo_sd_file))\n",
+ "band_names_nceo <- c(paste0('agbd_2017') #, paste0('agbd_sd_2017'))\n",
+ "filenames_nceo <- c(file.path(nceo_folder, nceo_file) #, file.path(nceo_folder, nceo_sd_file))\n",
"print(filenames_nceo)\n",
"\n",
"tile_stack <- stack(filenames_nceo)#, aoi)#, datatype=\"INT1U\", format='GTiff', options=\"COMPRESS=LZW\")\n",
@@ -808,7 +808,7 @@
},
{
"cell_type": "markdown",
- "id": "interpreted-advancement",
+ "id": "thirty-issue",
"metadata": {},
"source": [
"#### Plot the NCEO AGBD for 2017"
@@ -817,7 +817,7 @@
{
"cell_type": "code",
"execution_count": 11,
- "id": "outside-controversy",
+ "id": "sticky-wilderness",
"metadata": {},
"outputs": [
{
@@ -853,12 +853,12 @@
],
"source": [
"plot(nceo$agbd_2017, main=\"NCEO AGBD 2017\", zlim = c(0,700) ); plot(aoi, add=T)\n",
- "plot(nceo$agbd_sd_2017, main=\"NCEO AGBD SD 2017\", zlim = c(0,300) ); plot(aoi, add=T)"
+ "# plot(nceo$agbd_sd_2017, main=\"NCEO AGBD SD 2017\", zlim = c(0,300) ); plot(aoi, add=T)"
]
},
{
"cell_type": "markdown",
- "id": "powerful-gallery",
+ "id": "still-block",
"metadata": {},
"source": [
"#### Read in the JPL Biomass data for this AOI"
@@ -867,7 +867,7 @@
{
"cell_type": "code",
"execution_count": 12,
- "id": "arranged-handle",
+ "id": "lasting-opposition",
"metadata": {},
"outputs": [
{
@@ -926,7 +926,7 @@
{
"cell_type": "code",
"execution_count": 14,
- "id": "integrated-candy",
+ "id": "regular-florence",
"metadata": {},
"outputs": [
{
@@ -957,7 +957,7 @@
},
{
"cell_type": "markdown",
- "id": "optical-banana",
+ "id": "coordinated-lodging",
"metadata": {},
"source": [
"#### Plot the JPL AGBD for 2020"
@@ -966,7 +966,7 @@
{
"cell_type": "code",
"execution_count": 15,
- "id": "interstate-polymer",
+ "id": "integrated-perth",
"metadata": {},
"outputs": [
{
@@ -991,7 +991,7 @@
},
{
"cell_type": "markdown",
- "id": "developed-bracelet",
+ "id": "specified-joint",
"metadata": {},
"source": [
"#### Read in forest cover raster. Currently using 30% forest cover from Hansen product. The cover rasters have been resampled to the resolutions of CCI Biomass, JPL Biomass, and NCEO Biomass for use as a forest cover mask."
@@ -1000,7 +1000,7 @@
{
"cell_type": "code",
"execution_count": 18,
- "id": "prerequisite-basketball",
+ "id": "specific-japanese",
"metadata": {
"collapsed": true,
"jupyter": {
@@ -1054,7 +1054,7 @@
},
{
"cell_type": "markdown",
- "id": "appointed-dublin",
+ "id": "looking-concord",
"metadata": {},
"source": [
"#### Create 30% cover forest threshold mask for CCI"
@@ -1063,7 +1063,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "other-offense",
+ "id": "nervous-thumbnail",
"metadata": {},
"outputs": [],
"source": [
@@ -1076,7 +1076,7 @@
},
{
"cell_type": "markdown",
- "id": "enabling-citation",
+ "id": "treated-middle",
"metadata": {},
"source": [
"#### Create 30% cover forest threshold mask for JPL"
@@ -1085,7 +1085,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "vertical-aside",
+ "id": "increasing-catch",
"metadata": {},
"outputs": [],
"source": [
@@ -1098,7 +1098,7 @@
},
{
"cell_type": "markdown",
- "id": "common-bulgaria",
+ "id": "spare-pocket",
"metadata": {},
"source": [
"#### Create 30% cover forest threshold mask for NCEO"
@@ -1107,7 +1107,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "prompt-broadcasting",
+ "id": "loaded-snapshot",
"metadata": {},
"outputs": [],
"source": [
@@ -1121,7 +1121,7 @@
{
"cell_type": "code",
"execution_count": 17,
- "id": "weighted-updating",
+ "id": "polar-abuse",
"metadata": {},
"outputs": [],
"source": [
@@ -1133,14 +1133,14 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "interior-scholarship",
+ "id": "intended-breakdown",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
- "id": "seeing-number",
+ "id": "laden-efficiency",
"metadata": {},
"source": [
"## The following is old code I'm keeping here for reference purposes"
@@ -1148,7 +1148,7 @@
},
{
"cell_type": "markdown",
- "id": "involved-blink",
+ "id": "ecological-closer",
"metadata": {},
"source": [
"#### Calculate total aboveground biomass and average aboveground biomass density for 2020 CCI and NCEO biomass for the selected country"
@@ -1157,7 +1157,7 @@
{
"cell_type": "code",
"execution_count": 23,
- "id": "typical-patent",
+ "id": "olive-insurance",
"metadata": {
"collapsed": true,
"jupyter": {
@@ -1369,7 +1369,7 @@
},
{
"cell_type": "markdown",
- "id": "harmful-notification",
+ "id": "asian-feedback",
"metadata": {},
"source": [
"#### Print out basic forest aboveground biomass statistics for the selected country\n",
@@ -1379,7 +1379,7 @@
{
"cell_type": "code",
"execution_count": 24,
- "id": "specified-label",
+ "id": "competent-validation",
"metadata": {},
"outputs": [
{
@@ -1409,7 +1409,7 @@
{
"cell_type": "code",
"execution_count": 26,
- "id": "incredible-cable",
+ "id": "painful-avenue",
"metadata": {},
"outputs": [
{
@@ -1456,7 +1456,7 @@
{
"cell_type": "code",
"execution_count": null,
- "id": "charged-demand",
+ "id": "alpine-chrome",
"metadata": {},
"outputs": [],
"source": []
--
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